- ExPASy Proteomics Server (단백질 분석 프로그램들)
- MOTIF (protein/promoter motif analysis)
- NCBI CDD (Conserved Domain Database; protein domain/motif analysis)
- ProtParam (protein parameter analysis tool: MW, pI, amino acid composition, and etc)
- PSORT (prediction of protein subcellular localization)
- TargetP (prediction of protein subcellular localization)
- NCBI blast (protein/DNA sequence similarity analysis)
- Multiple Sequence Alignment tools (Clustal, Kalign, MAFFT, and etc)
- Simple Phylogeny (phylogenetic tree generation)